Variant report

Variant	rs7146567
Chromosome Location	chr14:79032690-79032691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78630297..78631161-chr14:79032243..79033558,5	MCF-7	breast:
2	chr14:78487645..78489732-chr14:79030970..79033718,2	MCF-7	breast:
3	chr14:78488084..78488705-chr14:79032639..79033141,2	MCF-7	breast:
4	chr14:79032628..79033178-chr14:79302963..79303483,2	MCF-7	breast:
5	chr14:78914552..78915389-chr14:79032436..79033359,2	K562	blood:
6	chr14:78607670..78608593-chr14:79032573..79033556,3	MCF-7	breast:
7	chr14:78914744..78915444-chr14:79032671..79033528,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10131136	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12590068	1.00[JPT][hapmap]
rs4643247	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7143484	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7150885	1.00[CEU][hapmap]
rs8005495	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs8017049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8018456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79032000-79033000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr14:79032000-79033400	Enhancers	Fetal Muscle Leg	muscle
3	chr14:79032200-79033000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:79032200-79033000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:79032200-79033000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:79032400-79032800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr14:79032400-79032800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr14:79032400-79032800	Flanking Active TSS	Brain Angular Gyrus	brain
9	chr14:79032400-79032800	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr14:79032400-79032800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr14:79032400-79033000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:79032400-79033000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:79032400-79033000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr14:79032400-79033000	Active TSS	Aorta	Aorta
15	chr14:79032400-79033000	Enhancers	Fetal Brain Male	brain
16	chr14:79032400-79033000	Enhancers	Pancreas	Pancrea
17	chr14:79032400-79033000	Active TSS	Right Ventricle	heart
18	chr14:79032400-79033000	Active TSS	Hela-S3	cervix
19	chr14:79032400-79033200	Active TSS	Brain Cingulate Gyrus	brain
20	chr14:79032400-79033200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:79032400-79033200	Active TSS	Stomach Smooth Muscle	stomach
22	chr14:79032400-79034400	Enhancers	HUVEC	blood vessel
23	chr14:79032600-79032800	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr14:79032600-79032800	Active TSS	Primary T cells fromperipheralblood	blood
25	chr14:79032600-79032800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:79032600-79032800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr14:79032600-79032800	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr14:79032600-79032800	Enhancers	HSMMtube	muscle
29	chr14:79032600-79032800	Active TSS	NH-A	brain
30	chr14:79032600-79033000	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr14:79032600-79033000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr14:79032600-79033000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr14:79032600-79033000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:79032600-79033000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr14:79032600-79033000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:79032600-79033000	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr14:79032600-79033000	Enhancers	Liver	Liver
38	chr14:79032600-79033000	Active TSS	Brain Substantia Nigra	brain
39	chr14:79032600-79033000	Flanking Active TSS	Fetal Muscle Trunk	muscle
40	chr14:79032600-79033000	Active TSS	Psoas Muscle	Psoas
41	chr14:79032600-79033000	Active TSS	Rectal Smooth Muscle	rectum
42	chr14:79032600-79033000	Active TSS	Right Atrium	heart
43	chr14:79032600-79033000	Active TSS	Monocytes-CD14+_RO01746	blood
44	chr14:79032600-79033200	Enhancers	Primary B cells from peripheral blood	blood
45	chr14:79032600-79033200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:79032600-79033200	Active TSS	Brain Anterior Caudate	brain
47	chr14:79032600-79033200	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr14:79032600-79033200	Active TSS	Fetal Brain Female	brain
49	chr14:79032600-79033200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr14:79032600-79033200	Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links