Variant report

Variant	rs17107887
Chromosome Location	chr14:79059390-79059391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10132085	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs1035612	1.00[AFR][1000 genomes]
rs12586229	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12587427	1.00[AFR][1000 genomes]
rs12588327	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12588444	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107869	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107885	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17107898	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107907	1.00[AFR][1000 genomes]
rs17107912	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107978	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107986	1.00[AFR][1000 genomes]
rs17107993	1.00[AFR][1000 genomes]
rs17108011	1.00[AFR][1000 genomes]
rs17108021	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17108073	1.00[AFR][1000 genomes]
rs17108078	1.00[AFR][1000 genomes]
rs17108121	1.00[ASW][hapmap]
rs2287495	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs2370825	0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs28538310	0.80[ASN][1000 genomes]
rs56658384	1.00[AFR][1000 genomes]
rs56813549	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs57388154	1.00[AFR][1000 genomes]
rs58271165	1.00[AFR][1000 genomes]
rs58355788	1.00[AFR][1000 genomes]
rs58525848	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59354957	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7142533	1.00[AFR][1000 genomes]
rs7150885	0.92[JPT][hapmap]
rs7153070	1.00[AFR][1000 genomes]
rs7160080	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs8003025	1.00[AFR][1000 genomes]
rs8018626	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79056000-79059600	Weak transcription	Fetal Brain Male	brain
2	chr14:79058800-79059800	Enhancers	Brain Germinal Matrix	brain
3	chr14:79059000-79059400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:79059000-79059400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:79059000-79059400	Enhancers	Brain Anterior Caudate	brain
6	chr14:79059200-79064400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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