Variant report

Variant	rs17107869
Chromosome Location	chr14:79038150-79038151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1035612	1.00[AFR][1000 genomes]
rs12586229	1.00[AFR][1000 genomes]
rs12587427	1.00[AFR][1000 genomes]
rs12588327	1.00[AFR][1000 genomes]
rs12588444	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107885	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107887	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107898	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107907	1.00[AFR][1000 genomes]
rs17107912	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107978	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17107986	1.00[AFR][1000 genomes]
rs17107993	1.00[AFR][1000 genomes]
rs17108011	1.00[AFR][1000 genomes]
rs17108021	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17108073	1.00[AFR][1000 genomes]
rs17108078	1.00[AFR][1000 genomes]
rs17108121	1.00[ASW][hapmap]
rs2287495	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs56658384	1.00[AFR][1000 genomes]
rs56813549	1.00[AFR][1000 genomes]
rs57388154	1.00[AFR][1000 genomes]
rs58271165	1.00[AFR][1000 genomes]
rs58355788	1.00[AFR][1000 genomes]
rs58525848	1.00[AFR][1000 genomes]
rs59354957	1.00[AFR][1000 genomes]
rs7142533	1.00[AFR][1000 genomes]
rs7153070	1.00[AFR][1000 genomes]
rs8003025	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79033000-79038600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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