Variant report

Variant	rs17108121
Chromosome Location	chr14:79185813-79185814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1035612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10483916	1.00[ASW][hapmap]
rs12588444	1.00[ASW][hapmap]
rs1509152	1.00[ASW][hapmap]
rs17107869	1.00[ASW][hapmap]
rs17107885	1.00[ASW][hapmap]
rs17107887	1.00[ASW][hapmap]
rs17107898	1.00[ASW][hapmap]
rs17107912	1.00[ASW][hapmap]
rs17107978	1.00[ASW][hapmap]
rs17108021	1.00[ASW][hapmap]
rs17108078	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs17108116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2287495	1.00[ASW][hapmap]
rs34694236	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3919592	1.00[ASW][hapmap]
rs41476546	0.93[CHB][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7161287	1.00[LWK][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:79181600-79188600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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