Variant report

Variant	rs10483916
Chromosome Location	chr14:79316010-79316011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10459553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10483918	1.00[MKK][hapmap]
rs11849965	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588051	1.00[ASW][hapmap]
rs12588444	1.00[ASW][hapmap]
rs1509152	1.00[ASW][hapmap]
rs154316	0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17108021	1.00[ASW][hapmap]
rs17108121	1.00[ASW][hapmap]
rs17108320	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108322	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1991001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919592	1.00[ASW][hapmap]
rs57217615	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59553734	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60118334	0.92[ASN][1000 genomes]
rs7155853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160771	1.00[MKK][hapmap]
rs73319786	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321604	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73321605	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79314000-79317000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:79314200-79317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:79314200-79317800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:79314400-79316800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr14:79314400-79317800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:79314600-79316400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:79314600-79317800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:79314600-79318200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:79314800-79317800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:79314800-79318000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:79315400-79316600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:79315600-79316200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:79315600-79316800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:79315600-79318000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:79315800-79316400	Weak transcription	Fetal Brain Male	brain
16	chr14:79315800-79316800	Enhancers	HUES6 Cell Line	embryonic stem cell

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