Variant report

Variant	rs17108322
Chromosome Location	chr14:79339798-79339799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10132970	1.00[EUR][1000 genomes]
rs10133681	0.92[EUR][1000 genomes]
rs10135271	1.00[EUR][1000 genomes]
rs10138563	1.00[EUR][1000 genomes]
rs10138641	1.00[EUR][1000 genomes]
rs1035612	1.00[AFR][1000 genomes]
rs10459553	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10483916	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10873320	1.00[EUR][1000 genomes]
rs11849965	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12432509	0.92[EUR][1000 genomes]
rs12588051	1.00[AFR][1000 genomes]
rs12588444	1.00[AFR][1000 genomes]
rs149202	0.92[EUR][1000 genomes]
rs1532730	1.00[EUR][1000 genomes]
rs154316	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs154320	0.89[CHB][hapmap]
rs168903	1.00[EUR][1000 genomes]
rs17108073	1.00[AFR][1000 genomes]
rs17108078	1.00[AFR][1000 genomes]
rs17108320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17108489	0.92[EUR][1000 genomes]
rs1991001	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2062739	1.00[EUR][1000 genomes]
rs2202186	1.00[EUR][1000 genomes]
rs2370894	1.00[EUR][1000 genomes]
rs4903810	1.00[EUR][1000 genomes]
rs4903814	0.92[EUR][1000 genomes]
rs55909861	1.00[EUR][1000 genomes]
rs56658384	1.00[AFR][1000 genomes]
rs57121695	1.00[EUR][1000 genomes]
rs58355788	1.00[AFR][1000 genomes]
rs60118334	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7144960	1.00[EUR][1000 genomes]
rs7155853	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7157445	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs73321604	0.84[ASN][1000 genomes]
rs73321605	0.84[ASN][1000 genomes]
rs8003025	1.00[AFR][1000 genomes]
rs8009822	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9652298	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79335600-79341400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:79337400-79342400	Weak transcription	Fetal Brain Female	brain
3	chr14:79338400-79341000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79339400-79341000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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