Variant report

Variant	rs9652298
Chromosome Location	chr14:79482977-79482978
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10132970	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10133681	0.92[EUR][1000 genomes]
rs10134650	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10135271	1.00[EUR][1000 genomes]
rs10138563	1.00[EUR][1000 genomes]
rs10138641	1.00[EUR][1000 genomes]
rs10148992	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10450893	1.00[MEX][hapmap]
rs10873320	1.00[EUR][1000 genomes]
rs11850213	1.00[MEX][hapmap]
rs11850747	1.00[MEX][hapmap]
rs12432509	0.81[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs12878144	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs149202	0.92[EUR][1000 genomes]
rs1532727	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs1532730	1.00[EUR][1000 genomes]
rs168903	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17108322	1.00[EUR][1000 genomes]
rs17108489	1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2062739	1.00[EUR][1000 genomes]
rs2062742	0.81[CHB][hapmap]
rs2062743	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2062745	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2088965	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2102170	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2202169	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2202170	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2202182	1.00[MEX][hapmap]
rs2202186	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2370894	1.00[EUR][1000 genomes]
rs2370896	0.82[JPT][hapmap]
rs41495049	1.00[MEX][hapmap]
rs4903810	1.00[EUR][1000 genomes]
rs4903814	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs4903815	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs55909861	1.00[EUR][1000 genomes]
rs57121695	1.00[EUR][1000 genomes]
rs60118334	1.00[EUR][1000 genomes]
rs6574479	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7144960	1.00[EUR][1000 genomes]
rs8011782	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79477400-79483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:79477400-79483200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:79477600-79483600	Weak transcription	NHDF-Ad	bronchial
4	chr14:79478200-79483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:79478200-79485400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:79478400-79483000	Weak transcription	NH-A	brain
7	chr14:79478400-79485200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:79482200-79484000	Enhancers	A549	lung
9	chr14:79482200-79484200	Enhancers	HSMMtube	muscle
10	chr14:79482400-79483000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:79482400-79483800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:79482400-79485800	Enhancers	Osteobl	bone
13	chr14:79482600-79486200	Enhancers	HSMM	muscle
14	chr14:79482600-79486200	Enhancers	NHLF	lung
15	chr14:79482800-79483800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:79482800-79484000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:79482800-79484000	Enhancers	HMEC	breast
18	chr14:79482800-79486000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:79482800-79486200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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