Variant report

Variant	rs10133681
Chromosome Location	chr14:79504958-79504959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10132970	0.92[EUR][1000 genomes]
rs10134650	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10135271	0.92[EUR][1000 genomes]
rs10138563	0.92[EUR][1000 genomes]
rs10138639	1.00[AMR][1000 genomes]
rs10138641	0.92[EUR][1000 genomes]
rs10873320	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11622043	1.00[AMR][1000 genomes]
rs11845522	1.00[AMR][1000 genomes]
rs12432509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149202	0.84[EUR][1000 genomes]
rs1532727	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1532730	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs168903	0.92[EUR][1000 genomes]
rs17108322	0.92[EUR][1000 genomes]
rs17108489	0.84[EUR][1000 genomes]
rs1875596	1.00[AMR][1000 genomes]
rs1875597	1.00[AMR][1000 genomes]
rs2062739	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2062742	0.93[ASN][1000 genomes]
rs2062743	0.93[ASN][1000 genomes]
rs2062745	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2088965	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2102170	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2202169	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2202170	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2202177	1.00[AMR][1000 genomes]
rs2202186	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2221299	1.00[AMR][1000 genomes]
rs2221300	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2370894	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2370896	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2653539	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243661	1.00[AMR][1000 genomes]
rs4635270	1.00[AMR][1000 genomes]
rs4903810	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903831	1.00[AMR][1000 genomes]
rs55909861	0.92[EUR][1000 genomes]
rs57121695	0.92[EUR][1000 genomes]
rs60118334	0.92[EUR][1000 genomes]
rs6574479	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6574481	1.00[AMR][1000 genomes]
rs6574490	1.00[AMR][1000 genomes]
rs7144960	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021865	1.00[AMR][1000 genomes]
rs9652298	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79495200-79506400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:79504000-79505000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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