Variant report

Variant	rs55909861
Chromosome Location	chr14:79358146-79358147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132970	1.00[EUR][1000 genomes]
rs10133681	0.92[EUR][1000 genomes]
rs10135271	1.00[EUR][1000 genomes]
rs10138563	1.00[EUR][1000 genomes]
rs10138641	1.00[EUR][1000 genomes]
rs10873320	1.00[EUR][1000 genomes]
rs12432509	0.92[EUR][1000 genomes]
rs149202	0.92[EUR][1000 genomes]
rs1532730	1.00[EUR][1000 genomes]
rs168903	1.00[EUR][1000 genomes]
rs17108322	1.00[EUR][1000 genomes]
rs17108489	0.92[EUR][1000 genomes]
rs2062739	1.00[EUR][1000 genomes]
rs2202186	1.00[EUR][1000 genomes]
rs2370894	1.00[EUR][1000 genomes]
rs4903810	1.00[EUR][1000 genomes]
rs4903814	0.92[EUR][1000 genomes]
rs55744457	1.00[AMR][1000 genomes]
rs57121695	1.00[EUR][1000 genomes]
rs58501370	1.00[AMR][1000 genomes]
rs59271106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60118334	1.00[EUR][1000 genomes]
rs61564948	1.00[AMR][1000 genomes]
rs7144960	1.00[EUR][1000 genomes]
rs74064952	1.00[AMR][1000 genomes]
rs74064962	1.00[AMR][1000 genomes]
rs74064963	1.00[AMR][1000 genomes]
rs74064967	1.00[AMR][1000 genomes]
rs74064970	1.00[AMR][1000 genomes]
rs74067004	1.00[AMR][1000 genomes]
rs74067139	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067142	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067146	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652298	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79357400-79360000	Enhancers	Brain Germinal Matrix	brain
2	chr14:79357600-79358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:79358000-79358400	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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