Variant report

Variant	rs10132970
Chromosome Location	chr14:79467617-79467618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10133681	0.92[EUR][1000 genomes]
rs10134650	1.00[JPT][hapmap]
rs10135271	1.00[EUR][1000 genomes]
rs10138563	1.00[EUR][1000 genomes]
rs10138641	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10148992	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10873320	1.00[EUR][1000 genomes]
rs12432509	0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs12878144	0.82[JPT][hapmap]
rs149202	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1532727	0.82[JPT][hapmap]
rs1532730	1.00[EUR][1000 genomes]
rs168903	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17108322	1.00[EUR][1000 genomes]
rs17108489	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108531	1.00[CHB][hapmap]
rs2062739	1.00[EUR][1000 genomes]
rs2062743	0.82[JPT][hapmap]
rs2062745	0.82[JPT][hapmap]
rs2088965	0.82[JPT][hapmap]
rs2102170	0.82[JPT][hapmap]
rs2202169	0.82[JPT][hapmap]
rs2202170	0.82[JPT][hapmap]
rs2202186	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2370893	1.00[CHB][hapmap]
rs2370894	1.00[EUR][1000 genomes]
rs2370896	0.82[JPT][hapmap]
rs257206	1.00[CHB][hapmap]
rs2940743	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2964906	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2964907	1.00[CHB][hapmap]
rs4903810	1.00[EUR][1000 genomes]
rs4903814	0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs4903815	0.82[JPT][hapmap]
rs55909861	1.00[EUR][1000 genomes]
rs57121695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60118334	1.00[EUR][1000 genomes]
rs6574479	0.82[JPT][hapmap]
rs7144960	1.00[EUR][1000 genomes]
rs9652298	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79454200-79471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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