Variant report

Variant	rs2653539
Chromosome Location	chr14:79585015-79585016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10133681	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134650	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10138639	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10139445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622043	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11845522	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12432509	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12878144	0.82[JPT][hapmap]
rs12893811	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12896260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1532727	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1875596	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1875597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062743	0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs2062745	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2088965	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2102170	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2202169	0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs2202170	0.85[CHD][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2202173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202177	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202178	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202181	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221300	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251903	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2370896	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2620390	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4141948	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635270	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903814	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs4903815	0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs4903822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903826	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903827	1.00[ASN][1000 genomes]
rs4903831	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5023075	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574479	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6574481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6574484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6574485	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574487	0.81[ASN][1000 genomes]
rs6574488	1.00[ASN][1000 genomes]
rs6574489	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574490	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144999	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145587	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7156110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8005119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011782	0.84[EUR][1000 genomes]
rs8021865	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs937650	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79584000-79585200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:79584200-79585200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:79584400-79590600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:79585000-79585200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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