Variant report

Variant	rs2620390
Chromosome Location	chr14:79592140-79592141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10134650	0.82[CHB][hapmap]
rs10138639	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10139370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10139445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10141828	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10141996	0.83[EUR][1000 genomes]
rs10142256	0.81[EUR][1000 genomes]
rs10143998	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10146180	0.80[EUR][1000 genomes]
rs10147558	0.85[EUR][1000 genomes]
rs10147940	0.81[EUR][1000 genomes]
rs10148388	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11622043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11625343	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11627661	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12147468	0.84[EUR][1000 genomes]
rs12147740	0.87[EUR][1000 genomes]
rs12323794	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12431671	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12432509	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12432817	0.89[EUR][1000 genomes]
rs12435865	0.86[EUR][1000 genomes]
rs12586394	0.83[EUR][1000 genomes]
rs12878144	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12881434	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12894123	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12896260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12897265	0.88[EUR][1000 genomes]
rs1532727	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs1547533	0.88[EUR][1000 genomes]
rs1547535	0.81[EUR][1000 genomes]
rs1566675	0.90[EUR][1000 genomes]
rs17108575	0.83[EUR][1000 genomes]
rs1875595	0.86[EUR][1000 genomes]
rs1875597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1995411	0.82[EUR][1000 genomes]
rs2035284	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2062741	0.81[EUR][1000 genomes]
rs2062742	0.82[CHB][hapmap]
rs2062743	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2062744	0.81[EUR][1000 genomes]
rs2062745	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2088965	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2102170	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2202168	0.85[EUR][1000 genomes]
rs2202169	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2202170	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2202172	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2202173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202175	0.93[EUR][1000 genomes]
rs2202176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202178	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2202179	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2202180	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2202183	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2202184	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202186	0.82[CHB][hapmap]
rs2221297	0.86[EUR][1000 genomes]
rs2221299	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2221300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251903	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2370896	0.82[JPT][hapmap]
rs2370900	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2370901	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2370902	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2370926	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2620398	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2653539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs28706257	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28831381	0.83[EUR][1000 genomes]
rs34121288	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4141948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4542593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4635270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903813	0.85[EUR][1000 genomes]
rs4903814	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4903815	0.82[JPT][hapmap]
rs4903816	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4903822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903825	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4903830	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4903831	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903833	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5023075	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6574478	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6574479	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6574480	0.91[EUR][1000 genomes]
rs6574481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6574484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6574489	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6574492	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7143117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7145587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7149325	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155818	0.89[EUR][1000 genomes]
rs7156110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7157779	0.85[EUR][1000 genomes]
rs7161610	0.89[EUR][1000 genomes]
rs72687493	0.82[AMR][1000 genomes]
rs8004582	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8005334	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8006615	0.89[EUR][1000 genomes]
rs8006983	0.85[EUR][1000 genomes]
rs8007813	0.85[EUR][1000 genomes]
rs8008393	0.85[EUR][1000 genomes]
rs8011832	0.80[EUR][1000 genomes]
rs8012099	0.81[EUR][1000 genomes]
rs8013072	0.89[EUR][1000 genomes]
rs8014314	0.84[EUR][1000 genomes]
rs8018180	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8019071	0.92[EUR][1000 genomes]
rs8020811	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8021865	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9323670	0.81[EUR][1000 genomes]
rs937649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs937650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997842	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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