Variant report

Variant	rs2035284
Chromosome Location	chr14:79578745-79578746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10133874	0.85[CEU][hapmap]
rs10135754	0.85[CEU][hapmap]
rs10135769	0.85[CEU][hapmap]
rs10139452	0.83[EUR][1000 genomes]
rs10139460	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs10141828	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10141996	0.88[EUR][1000 genomes]
rs10142256	0.87[EUR][1000 genomes]
rs10143998	0.94[EUR][1000 genomes]
rs10146180	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10146542	0.85[CEU][hapmap]
rs10147558	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10147940	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs10148388	0.92[EUR][1000 genomes]
rs10150011	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10151590	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs11159391	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs11159392	0.81[AMR][1000 genomes]
rs11159395	0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs11625343	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11627661	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11627905	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs12147468	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12147740	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12323794	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12431671	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12432817	0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12434809	0.96[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs12435865	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586394	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs12879491	0.87[JPT][hapmap]
rs12880107	0.86[JPT][hapmap]
rs12880287	0.81[EUR][1000 genomes]
rs12880289	0.83[JPT][hapmap]
rs12881434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884914	0.86[JPT][hapmap]
rs12887850	0.96[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs12890392	0.87[JPT][hapmap];0.86[YRI][hapmap]
rs12894123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12895916	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12897265	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1532728	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs154325	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs1547533	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547535	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1566675	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17108575	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1875595	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1995411	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2062740	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2062741	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2062744	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2062746	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs2088966	0.96[CEU][hapmap]
rs2088967	0.96[CEU][hapmap]
rs2127448	0.86[JPT][hapmap]
rs2127450	0.86[JPT][hapmap]
rs2134366	0.87[JPT][hapmap]
rs2202167	0.85[CEU][hapmap]
rs2202168	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes]
rs2202171	0.96[CEU][hapmap]
rs2202172	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2202175	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2202179	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202180	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202183	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202184	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2221297	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2221298	0.85[CEU][hapmap]
rs2370895	0.92[CEU][hapmap]
rs2370900	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2370901	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370902	0.93[EUR][1000 genomes]
rs2620398	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28706257	0.92[EUR][1000 genomes]
rs28831381	0.86[EUR][1000 genomes]
rs2887887	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34121288	0.92[EUR][1000 genomes]
rs35916059	0.82[EUR][1000 genomes]
rs4899732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903813	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4903816	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs4903819	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs4903820	0.96[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs4903823	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs4903825	0.91[EUR][1000 genomes]
rs4903830	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903833	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs61639937	0.83[EUR][1000 genomes]
rs61992500	0.80[EUR][1000 genomes]
rs6574478	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs6574480	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6574492	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574493	0.96[CEU][hapmap]
rs6574495	0.86[JPT][hapmap]
rs7142308	0.81[CEU][hapmap]
rs7149325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151651	0.86[JPT][hapmap];0.92[YRI][hapmap]
rs7154545	0.87[JPT][hapmap];0.85[YRI][hapmap]
rs7155818	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7157779	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7161610	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72687406	0.83[EUR][1000 genomes]
rs8004582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005334	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8006615	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8006983	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8007813	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8008393	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8009383	1.00[CEU][hapmap]
rs8009417	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs8010365	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs8010673	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs8011832	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs8012099	0.87[EUR][1000 genomes]
rs8013072	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8014314	0.87[EUR][1000 genomes]
rs8016232	0.85[CEU][hapmap]
rs8016756	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs8017018	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs8018180	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019071	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020811	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872483	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9323670	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9323671	0.96[CEU][hapmap]
rs937648	0.96[CEU][hapmap]
rs997842	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79565000-79578800	Weak transcription	Aorta	Aorta
2	chr14:79577600-79578800	Enhancers	HSMMtube	muscle
3	chr14:79577600-79579200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:79577600-79579400	Enhancers	HSMM	muscle
5	chr14:79577800-79578800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:79577800-79579200	Enhancers	Osteobl	bone
7	chr14:79577800-79579400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:79578000-79579200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:79578000-79581200	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:79578200-79578800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:79578400-79578800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:79578400-79579400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:79578400-79581200	Enhancers	Colon Smooth Muscle	Colon
14	chr14:79578600-79579000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr14:79578600-79579200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:79578600-79579200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links