Variant report

Variant	rs12880289
Chromosome Location	chr14:79600434-79600435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11159395	0.83[JPT][hapmap]
rs12147468	0.83[JPT][hapmap]
rs12431671	0.83[JPT][hapmap]
rs12434809	0.83[JPT][hapmap]
rs12435865	0.82[JPT][hapmap]
rs12879491	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12880107	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12881434	0.83[JPT][hapmap]
rs12884914	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12887850	0.81[JPT][hapmap]
rs12890392	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12894123	0.81[JPT][hapmap]
rs12895916	0.83[JPT][hapmap]
rs1547533	0.81[JPT][hapmap]
rs1566675	0.81[JPT][hapmap]
rs1875595	0.81[JPT][hapmap]
rs2035284	0.83[JPT][hapmap]
rs2062746	0.83[JPT][hapmap]
rs2127448	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2127450	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2134366	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202168	0.81[JPT][hapmap]
rs2202175	0.81[JPT][hapmap]
rs2221297	0.83[JPT][hapmap]
rs2370901	0.82[JPT][hapmap]
rs2620398	0.83[JPT][hapmap]
rs4899732	0.83[JPT][hapmap]
rs4903816	0.83[JPT][hapmap]
rs4903819	0.83[JPT][hapmap]
rs4903820	0.81[JPT][hapmap]
rs4903830	0.83[JPT][hapmap]
rs6574478	0.83[JPT][hapmap]
rs6574480	0.82[JPT][hapmap]
rs6574492	0.81[JPT][hapmap]
rs6574495	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149325	0.83[JPT][hapmap]
rs7151651	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7154545	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7155818	0.83[JPT][hapmap]
rs7156473	0.91[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72687493	0.84[EUR][1000 genomes]
rs8004582	0.83[JPT][hapmap]
rs8006615	0.83[JPT][hapmap]
rs8006983	0.81[JPT][hapmap]
rs8007813	0.81[JPT][hapmap]
rs8008393	0.81[JPT][hapmap]
rs8010365	0.83[JPT][hapmap]
rs8010673	0.81[JPT][hapmap]
rs8020811	0.81[JPT][hapmap]
rs997842	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79600400-79601600	Enhancers	Brain Anterior Caudate	brain

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