Variant report

Variant	rs7151651
Chromosome Location	chr14:79614043-79614044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11159396	0.89[CEU][hapmap]
rs12431671	0.92[YRI][hapmap]
rs12432076	0.85[CEU][hapmap]
rs12432817	0.80[YRI][hapmap]
rs12879491	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12880107	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12880289	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881434	0.86[JPT][hapmap]
rs12884914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs12890392	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12894123	0.85[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs12895916	0.92[YRI][hapmap]
rs1566675	0.87[ASW][hapmap];0.85[YRI][hapmap]
rs2035284	0.86[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs2062746	0.92[YRI][hapmap]
rs2127448	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs2127450	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs2134366	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202175	0.87[ASW][hapmap];0.92[YRI][hapmap]
rs2202179	0.84[AFR][1000 genomes]
rs2202183	0.80[AFR][1000 genomes]
rs2219848	0.85[CEU][hapmap]
rs2370901	0.86[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs2620398	0.86[JPT][hapmap]
rs4899732	0.86[JPT][hapmap]
rs4903823	0.85[YRI][hapmap]
rs4903830	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs6574495	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149325	0.86[JPT][hapmap]
rs7154545	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7156473	0.96[CEU][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72687493	0.83[EUR][1000 genomes]
rs766023	0.81[CEU][hapmap]
rs8004582	0.86[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs8010673	0.87[ASW][hapmap];0.85[YRI][hapmap]
rs8020811	0.87[ASW][hapmap];0.85[YRI][hapmap]
rs997842	0.87[ASW][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7151651	VASH1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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