Variant report

Variant	rs11159396
Chromosome Location	chr14:79610807-79610808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10141828	0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10147558	0.81[EUR][1000 genomes]
rs10148388	0.83[EUR][1000 genomes]
rs11625343	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11627661	0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12323794	0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12586394	0.82[JPT][hapmap]
rs12879491	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs12880107	0.85[CEU][hapmap]
rs12880289	0.83[EUR][1000 genomes]
rs12884914	0.89[CEU][hapmap]
rs12890392	0.86[CEU][hapmap]
rs17108575	0.90[JPT][hapmap]
rs2088966	0.82[JPT][hapmap]
rs2088967	0.82[JPT][hapmap]
rs2127448	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs2127450	0.88[CEU][hapmap]
rs2134366	0.83[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2202171	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs2370895	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2370902	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2370926	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620398	0.83[AMR][1000 genomes]
rs28706257	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34121288	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4903825	0.84[EUR][1000 genomes]
rs4903830	0.81[CEU][hapmap]
rs4903833	0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6574480	0.80[CEU][hapmap]
rs6574493	0.91[JPT][hapmap]
rs6574495	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7151651	0.89[CEU][hapmap]
rs7154545	0.83[CEU][hapmap]
rs7156473	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7157779	0.82[EUR][1000 genomes]
rs72687493	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005334	0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8009383	0.90[JPT][hapmap]
rs8011832	0.84[CHB][hapmap]
rs8014314	0.80[EUR][1000 genomes]
rs937648	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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