Variant report

Variant	rs10148388
Chromosome Location	chr14:79544380-79544381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10133874	0.83[EUR][1000 genomes]
rs10135754	0.82[EUR][1000 genomes]
rs10135769	0.82[EUR][1000 genomes]
rs10139452	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10139460	0.90[EUR][1000 genomes]
rs10141828	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141996	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10142256	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10142652	0.82[EUR][1000 genomes]
rs10143998	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10146180	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10146527	0.82[EUR][1000 genomes]
rs10146542	0.82[EUR][1000 genomes]
rs10147558	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10147940	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10150011	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10151372	0.97[ASN][1000 genomes]
rs10151590	0.90[EUR][1000 genomes]
rs11625343	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627661	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627905	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11849134	0.81[EUR][1000 genomes]
rs12147468	0.83[EUR][1000 genomes]
rs12147740	0.89[EUR][1000 genomes]
rs12323794	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12431671	0.91[EUR][1000 genomes]
rs12432817	0.90[EUR][1000 genomes]
rs12435865	0.85[EUR][1000 genomes]
rs12586394	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12881434	0.89[EUR][1000 genomes]
rs12894123	0.91[EUR][1000 genomes]
rs12897265	0.89[EUR][1000 genomes]
rs1547533	0.87[EUR][1000 genomes]
rs1547535	0.83[EUR][1000 genomes]
rs1566675	0.89[EUR][1000 genomes]
rs17108558	0.86[EUR][1000 genomes]
rs17108575	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1875595	0.88[EUR][1000 genomes]
rs1995411	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2035284	0.92[EUR][1000 genomes]
rs2062740	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2062741	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2062744	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2202167	0.82[EUR][1000 genomes]
rs2202168	0.84[EUR][1000 genomes]
rs2202172	0.93[EUR][1000 genomes]
rs2202175	0.91[EUR][1000 genomes]
rs2202179	0.90[EUR][1000 genomes]
rs2202180	0.90[EUR][1000 genomes]
rs2202183	0.92[EUR][1000 genomes]
rs2202184	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2221297	0.85[EUR][1000 genomes]
rs2370895	0.82[EUR][1000 genomes]
rs2370900	0.93[EUR][1000 genomes]
rs2370901	0.84[EUR][1000 genomes]
rs2370902	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2370926	0.81[EUR][1000 genomes]
rs2620398	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28706257	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28831381	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34121288	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4517711	0.84[EUR][1000 genomes]
rs4903811	0.82[EUR][1000 genomes]
rs4903812	0.82[EUR][1000 genomes]
rs4903813	0.84[EUR][1000 genomes]
rs4903816	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903825	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903830	0.92[EUR][1000 genomes]
rs4903833	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59502714	0.90[ASN][1000 genomes]
rs61639937	0.90[EUR][1000 genomes]
rs6574478	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6574480	0.90[EUR][1000 genomes]
rs6574492	0.86[EUR][1000 genomes]
rs7142821	0.80[AMR][1000 genomes]
rs7149325	0.90[EUR][1000 genomes]
rs7155818	0.91[EUR][1000 genomes]
rs7157779	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7161610	0.91[EUR][1000 genomes]
rs72687406	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72687493	0.83[EUR][1000 genomes]
rs8004582	0.91[EUR][1000 genomes]
rs8005334	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8006615	0.90[EUR][1000 genomes]
rs8006983	0.84[EUR][1000 genomes]
rs8007813	0.84[EUR][1000 genomes]
rs8008393	0.84[EUR][1000 genomes]
rs8011832	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8012099	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8013072	0.90[EUR][1000 genomes]
rs8014314	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8016232	0.81[AMR][1000 genomes]
rs8016756	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017018	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017027	0.81[AMR][1000 genomes]
rs8018180	0.92[EUR][1000 genomes]
rs8019071	0.92[EUR][1000 genomes]
rs8020811	0.93[EUR][1000 genomes]
rs874316	0.81[AMR][1000 genomes]
rs9323670	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9652299	0.81[AMR][1000 genomes]
rs997842	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv565247	chr14:79508316-79555651	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79542600-79545000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79543200-79546600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:79543800-79546400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links