Variant report

Variant	rs10151372
Chromosome Location	chr14:79545145-79545146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:79544999-79545316	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000258829	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10131645	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs10141828	1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[ASN][1000 genomes]
rs10146149	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10146527	0.88[JPT][hapmap]
rs10147558	0.81[CHB][hapmap]
rs10148388	0.97[ASN][1000 genomes]
rs11624311	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs11625343	1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs11627661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11627905	0.81[CHB][hapmap]
rs11627971	0.81[CHB][hapmap]
rs12323794	1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[ASN][1000 genomes]
rs12586394	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs17108575	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2062741	0.81[CHB][hapmap]
rs2062744	0.81[CHB][hapmap]
rs2088966	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2088967	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2202171	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2202185	0.83[CHB][hapmap]
rs2370902	0.93[ASN][1000 genomes]
rs28706257	0.97[ASN][1000 genomes]
rs34121288	0.93[ASN][1000 genomes]
rs4903825	0.97[ASN][1000 genomes]
rs4903833	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs59502714	0.87[ASN][1000 genomes]
rs6574493	1.00[CHB][hapmap]
rs7150552	1.00[ASW][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.80[TSI][hapmap];0.85[YRI][hapmap]
rs7157779	0.81[CHB][hapmap]
rs8005334	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs8009383	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs8016232	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs8016756	0.86[JPT][hapmap]
rs937648	1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv565247	chr14:79508316-79555651	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10151372	YLPM1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79543200-79546600	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79543800-79546400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:79545000-79546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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