Variant report

Variant	rs10146149
Chromosome Location	chr14:79508565-79508566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10131645	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10133874	0.81[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs10135754	0.81[CHB][hapmap]
rs10135769	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10139452	0.91[ASN][1000 genomes]
rs10139460	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10141828	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs10141996	0.97[ASN][1000 genomes]
rs10146180	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10146527	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10146542	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10147558	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs10147940	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10150011	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10151372	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10151590	0.81[CHB][hapmap]
rs11624311	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11625343	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs11627661	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11627905	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs11627971	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12323794	0.81[CHB][hapmap]
rs12586394	0.81[CHB][hapmap];0.91[ASN][1000 genomes]
rs1405474	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17108575	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs1995411	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2062740	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs2062741	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs2062744	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs2088967	0.81[CHB][hapmap]
rs2202167	0.81[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs2202171	0.81[CHB][hapmap]
rs2370895	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs31406	0.85[ASN][1000 genomes]
rs6574493	0.81[CHB][hapmap]
rs7150552	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs7157779	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs8005334	0.81[CHB][hapmap]
rs8009383	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs8011832	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8014314	0.97[ASN][1000 genomes]
rs8016232	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs8016756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8017018	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs8017027	0.89[ASN][1000 genomes]
rs874316	0.89[ASN][1000 genomes]
rs9323670	0.88[JPT][hapmap]
rs9323671	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs937648	0.81[CHB][hapmap]
rs9652299	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv565247	chr14:79508316-79555651	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79507400-79511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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