Variant report

Variant	rs31406
Chromosome Location	chr14:79455630-79455631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10131645	1.00[ASN][1000 genomes]
rs10133874	0.84[EUR][1000 genomes]
rs10135754	0.86[EUR][1000 genomes]
rs10135769	0.86[EUR][1000 genomes]
rs10139452	0.85[ASN][1000 genomes]
rs10141996	0.88[ASN][1000 genomes]
rs10142652	0.86[EUR][1000 genomes]
rs10146149	0.85[ASN][1000 genomes]
rs10146527	0.86[EUR][1000 genomes]
rs10146542	0.86[EUR][1000 genomes]
rs10147558	0.88[ASN][1000 genomes]
rs11159391	0.83[EUR][1000 genomes]
rs11159392	0.81[EUR][1000 genomes]
rs11624311	0.98[ASN][1000 genomes]
rs11627905	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11627971	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849134	0.84[EUR][1000 genomes]
rs12147527	0.83[EUR][1000 genomes]
rs12586394	0.83[ASN][1000 genomes]
rs12882464	0.80[EUR][1000 genomes]
rs1405474	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532728	0.80[EUR][1000 genomes]
rs1532729	0.81[EUR][1000 genomes]
rs154325	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17108558	0.82[EUR][1000 genomes]
rs17108575	0.88[ASN][1000 genomes]
rs2062740	0.88[ASN][1000 genomes]
rs2062741	0.88[ASN][1000 genomes]
rs2062744	0.88[ASN][1000 genomes]
rs2202167	0.86[EUR][1000 genomes]
rs2202185	0.88[EUR][1000 genomes]
rs2370895	0.85[EUR][1000 genomes]
rs2887887	0.81[EUR][1000 genomes]
rs4903811	0.86[EUR][1000 genomes]
rs4903812	0.86[EUR][1000 genomes]
rs7142308	0.83[EUR][1000 genomes]
rs7142821	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7150552	0.97[ASN][1000 genomes]
rs7157779	0.85[ASN][1000 genomes]
rs8008781	0.82[EUR][1000 genomes]
rs8009329	0.82[EUR][1000 genomes]
rs8009417	0.81[EUR][1000 genomes]
rs8014314	0.88[ASN][1000 genomes]
rs8016232	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016756	0.88[ASN][1000 genomes]
rs8017027	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs872483	0.83[EUR][1000 genomes]
rs874316	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs874317	0.83[EUR][1000 genomes]
rs9323669	0.88[EUR][1000 genomes]
rs9652299	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79454200-79471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:79455600-79456200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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