Variant report

Variant	rs1405474
Chromosome Location	chr14:79454672-79454673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10131645	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs10133874	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs10135754	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs10135769	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs10139452	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10139460	0.81[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs10141828	0.81[CEU][hapmap]
rs10141996	0.88[ASN][1000 genomes]
rs10142652	0.86[EUR][1000 genomes]
rs10146149	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10146180	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs10146527	0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs10146542	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs10147558	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10147940	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10150011	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs10151590	0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs11159391	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11159392	0.82[EUR][1000 genomes]
rs11159395	0.81[CEU][hapmap]
rs11624311	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs11625343	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs11627661	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs11627905	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11627971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849134	0.85[EUR][1000 genomes]
rs12147468	0.81[CEU][hapmap]
rs12147527	0.84[EUR][1000 genomes]
rs12147740	0.81[CEU][hapmap]
rs12323794	0.81[CEU][hapmap]
rs12434809	0.81[CEU][hapmap]
rs12435865	0.81[CEU][hapmap]
rs12586394	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12882464	0.81[EUR][1000 genomes]
rs12887850	0.81[CEU][hapmap]
rs12895916	0.81[CEU][hapmap]
rs1532728	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1532729	0.82[EUR][1000 genomes]
rs154325	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1547533	0.81[CEU][hapmap]
rs1566675	0.81[CEU][hapmap]
rs17108558	0.83[EUR][1000 genomes]
rs17108575	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1875595	0.80[CEU][hapmap]
rs1995411	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2062740	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2062741	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2062744	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2062746	0.81[CEU][hapmap]
rs2088966	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs2088967	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2202167	0.92[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2202168	0.81[CEU][hapmap]
rs2202171	0.81[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2202185	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2221297	0.81[CEU][hapmap]
rs2370895	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs2887887	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs31406	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903811	0.86[EUR][1000 genomes]
rs4903812	0.86[EUR][1000 genomes]
rs4903816	0.81[CEU][hapmap]
rs4903819	0.81[CEU][hapmap]
rs4903820	0.81[CEU][hapmap]
rs4903823	0.81[CEU][hapmap]
rs4903830	0.80[CEU][hapmap]
rs4903833	0.81[JPT][hapmap]
rs61639937	0.80[EUR][1000 genomes]
rs6574478	0.81[CEU][hapmap]
rs6574480	0.84[CEU][hapmap]
rs6574492	0.81[CEU][hapmap]
rs6574493	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7142308	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7142821	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7150552	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7155818	0.81[CEU][hapmap]
rs7157779	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs72687406	0.80[EUR][1000 genomes]
rs8005334	0.81[CHB][hapmap]
rs8006615	0.81[CEU][hapmap]
rs8006983	0.81[CEU][hapmap]
rs8007813	0.81[CEU][hapmap]
rs8008393	0.81[CEU][hapmap]
rs8008781	0.83[EUR][1000 genomes]
rs8009329	0.81[EUR][1000 genomes]
rs8009417	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs8010365	0.81[CEU][hapmap]
rs8010673	0.81[CEU][hapmap]
rs8011832	0.81[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs8014314	0.88[ASN][1000 genomes]
rs8016232	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016756	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs8017018	0.80[CEU][hapmap];0.88[JPT][hapmap]
rs8017027	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8020811	0.81[CEU][hapmap]
rs872483	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs874316	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs874317	0.84[EUR][1000 genomes]
rs9323669	0.89[EUR][1000 genomes]
rs9323670	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs9323671	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs937648	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9652299	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs997842	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79452600-79454800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
2	chr14:79453400-79454800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:79453600-79454800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr14:79453600-79455000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr14:79453800-79454800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:79454200-79471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:79454600-79454800	Enhancers	HUES48 Cell Line	embryonic stem cell

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