Variant report

Variant	rs6574478
Chromosome Location	chr14:79524382-79524383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10133874	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs10135754	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs10135769	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs10139452	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10139460	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10141828	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10141996	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10142256	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10142652	0.84[AMR][1000 genomes]
rs10143998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146180	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10146527	0.84[AMR][1000 genomes]
rs10146542	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs10147558	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10147940	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10148388	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10150011	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10151590	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11159391	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs11159392	0.83[EUR][1000 genomes]
rs11159395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11625343	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11627661	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11627905	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11627971	0.82[CEU][hapmap]
rs11849134	0.83[AMR][1000 genomes]
rs12147468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12147527	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12147740	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[EUR][1000 genomes]
rs12323794	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12431671	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs12432817	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12434809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12435865	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12436277	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12586394	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12879491	0.81[JPT][hapmap]
rs12880107	0.86[JPT][hapmap]
rs12880287	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12880289	0.83[JPT][hapmap]
rs12881434	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs12882464	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12887850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12890392	0.81[JPT][hapmap]
rs12894123	0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes]
rs12895916	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12897265	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1405474	0.81[CEU][hapmap]
rs1532728	0.89[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs1532729	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154325	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs1547533	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1547535	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1566675	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17108558	0.83[EUR][1000 genomes]
rs17108575	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1875595	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1995411	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2035284	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs2062740	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2062741	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2062744	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2062746	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2088966	1.00[CEU][hapmap]
rs2088967	1.00[CEU][hapmap]
rs2134366	0.81[JPT][hapmap]
rs2202167	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs2202168	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2202171	1.00[CEU][hapmap]
rs2202172	0.96[EUR][1000 genomes]
rs2202175	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs2202179	0.95[EUR][1000 genomes]
rs2202180	0.95[EUR][1000 genomes]
rs2202183	0.97[EUR][1000 genomes]
rs2202184	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2202185	0.82[CEU][hapmap]
rs2221297	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2221298	0.89[CEU][hapmap]
rs2370895	0.96[CEU][hapmap];0.84[AMR][1000 genomes]
rs2370900	0.96[EUR][1000 genomes]
rs2370901	0.89[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs2370902	0.89[EUR][1000 genomes]
rs2620398	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28706257	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28831381	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2887887	0.89[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs34121288	0.88[EUR][1000 genomes]
rs35916059	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4517711	0.87[AMR][1000 genomes]
rs4899732	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs4903811	0.84[AMR][1000 genomes]
rs4903812	0.83[AMR][1000 genomes]
rs4903813	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4903816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4903819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903823	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs4903825	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4903830	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs4903833	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61639937	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6574480	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6574492	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6574493	1.00[CEU][hapmap]
rs7142308	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs7142821	0.86[ASN][1000 genomes]
rs7149325	0.96[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes]
rs7154545	0.81[JPT][hapmap]
rs7155818	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7157779	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7161610	0.96[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes]
rs72687406	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8004582	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes]
rs8005334	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8006615	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8006983	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8007813	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8008393	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8008781	0.86[ASN][1000 genomes]
rs8009329	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8009383	0.96[CEU][hapmap]
rs8009417	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs8010365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8010673	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs8011832	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8012099	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8013072	0.93[EUR][1000 genomes]
rs8014314	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8016232	0.89[CEU][hapmap]
rs8016756	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8017018	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8018180	0.95[EUR][1000 genomes]
rs8019071	0.97[EUR][1000 genomes]
rs8020811	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs872483	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs874317	0.81[EUR][1000 genomes]
rs9323670	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9323671	1.00[CEU][hapmap]
rs937648	1.00[CEU][hapmap]
rs997842	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv565247	chr14:79508316-79555651	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79517200-79528200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79523600-79524400	Enhancers	Colon Smooth Muscle	Colon
3	chr14:79524000-79524600	Enhancers	Rectal Smooth Muscle	rectum
4	chr14:79524200-79527600	Weak transcription	Stomach Smooth Muscle	stomach

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