Variant report

Variant	rs7142821
Chromosome Location	chr14:79482589-79482590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10133874	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10135754	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10135769	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10139452	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10139460	0.80[EUR][1000 genomes]
rs10141996	0.87[AMR][1000 genomes]
rs10142652	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10143998	0.86[ASN][1000 genomes]
rs10146527	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10146542	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10147558	0.85[AMR][1000 genomes]
rs10148388	0.80[AMR][1000 genomes]
rs10150011	0.80[EUR][1000 genomes]
rs10151590	0.80[EUR][1000 genomes]
rs11159391	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11159392	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11627905	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11627971	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11849134	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12147468	0.86[EUR][1000 genomes]
rs12147527	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432817	0.80[EUR][1000 genomes]
rs12435865	0.84[EUR][1000 genomes]
rs12436277	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12586394	0.86[AMR][1000 genomes]
rs12880287	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12882464	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12897265	0.81[EUR][1000 genomes]
rs1405474	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1532728	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1532729	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs154325	0.89[EUR][1000 genomes]
rs1547533	0.81[EUR][1000 genomes]
rs17108558	0.84[EUR][1000 genomes]
rs17108575	0.87[AMR][1000 genomes]
rs1875595	0.83[EUR][1000 genomes]
rs2062740	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2062741	0.87[AMR][1000 genomes]
rs2062744	0.87[AMR][1000 genomes]
rs2202167	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2202168	0.86[EUR][1000 genomes]
rs2202185	0.88[EUR][1000 genomes]
rs2221297	0.84[EUR][1000 genomes]
rs2370895	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2887887	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs31406	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35916059	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903811	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4903812	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4903813	0.86[EUR][1000 genomes]
rs4903816	0.85[ASN][1000 genomes]
rs61639937	0.80[EUR][1000 genomes]
rs6574478	0.86[ASN][1000 genomes]
rs7142308	0.96[EUR][1000 genomes]
rs7157779	0.85[AMR][1000 genomes]
rs72687406	0.80[EUR][1000 genomes]
rs8006615	0.80[EUR][1000 genomes]
rs8006983	0.86[EUR][1000 genomes]
rs8007813	0.86[EUR][1000 genomes]
rs8008393	0.86[EUR][1000 genomes]
rs8008781	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8009329	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8009417	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8014314	0.86[AMR][1000 genomes]
rs8016232	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8016756	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8017018	0.81[EUR][1000 genomes]
rs8017027	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs872483	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs874316	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs874317	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9323669	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9652299	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79477400-79483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:79477400-79483200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:79477600-79483600	Weak transcription	NHDF-Ad	bronchial
4	chr14:79478200-79483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:79478200-79485400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:79478400-79483000	Weak transcription	NH-A	brain
7	chr14:79478400-79485200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:79479000-79482600	Weak transcription	NHLF	lung
9	chr14:79479000-79482800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:79479200-79482800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:79479400-79482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:79480600-79482600	Weak transcription	HMEC	breast
13	chr14:79482200-79484000	Enhancers	A549	lung
14	chr14:79482200-79484200	Enhancers	HSMMtube	muscle
15	chr14:79482400-79483000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:79482400-79483800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:79482400-79485800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links