Variant report

Variant	rs2134366
Chromosome Location	chr14:79603544-79603545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11159395	0.81[JPT][hapmap]
rs11159396	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs12147468	0.81[JPT][hapmap]
rs12431671	0.81[JPT][hapmap]
rs12432076	0.81[CEU][hapmap]
rs12434809	0.81[JPT][hapmap]
rs12435865	0.81[JPT][hapmap]
rs12879491	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12880107	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12880289	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12881434	0.87[JPT][hapmap]
rs12884914	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12890392	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12894123	0.87[JPT][hapmap]
rs12895916	0.81[JPT][hapmap]
rs1875595	0.80[JPT][hapmap]
rs2035284	0.87[JPT][hapmap]
rs2062746	0.81[JPT][hapmap]
rs2127448	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2127450	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219848	0.82[CEU][hapmap]
rs2221297	0.81[JPT][hapmap]
rs2370901	0.87[JPT][hapmap]
rs2370926	1.00[AFR][1000 genomes]
rs2620398	0.87[JPT][hapmap]
rs4899732	0.87[JPT][hapmap]
rs4903816	0.81[JPT][hapmap]
rs4903819	0.81[JPT][hapmap]
rs4903830	0.81[JPT][hapmap]
rs6574478	0.81[JPT][hapmap]
rs6574480	0.81[JPT][hapmap]
rs6574495	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7149325	0.87[JPT][hapmap]
rs7151651	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7154545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7155818	0.81[JPT][hapmap]
rs7156473	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs72687493	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs766023	0.86[CEU][hapmap]
rs8004582	0.87[JPT][hapmap]
rs8006615	0.81[JPT][hapmap]
rs8010365	0.81[JPT][hapmap]
rs997842	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79602400-79603600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:79602400-79603800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:79602400-79603800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:79602400-79603800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:79602400-79603800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79602800-79603600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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