Variant report
| Variant | rs2219848 |
|---|---|
| Chromosome Location | chr14:79633990-79633991 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:79633552..79635611-chr14:79637121..79639941,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11622061 | 0.85[CHB][hapmap] |
| rs12432016 | 0.85[CHB][hapmap] |
| rs12432076 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap] |
| rs12879491 | 0.86[CEU][hapmap] |
| rs12880107 | 0.85[CEU][hapmap] |
| rs12880228 | 0.80[CHB][hapmap] |
| rs12880289 | 0.81[EUR][1000 genomes] |
| rs12884914 | 0.85[CEU][hapmap] |
| rs12890392 | 0.85[CEU][hapmap] |
| rs12891595 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2127448 | 0.84[CEU][hapmap] |
| rs2127450 | 0.84[CEU][hapmap] |
| rs2134366 | 0.82[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2370930 | 0.89[CHB][hapmap] |
| rs2370934 | 0.85[CHB][hapmap] |
| rs2370935 | 0.86[CHB][hapmap] |
| rs4636834 | 0.85[CHB][hapmap] |
| rs4899736 | 0.85[CHB][hapmap] |
| rs6574495 | 0.85[CEU][hapmap] |
| rs6574499 | 0.85[CHB][hapmap] |
| rs7151651 | 0.85[CEU][hapmap] |
| rs7151711 | 0.85[CHB][hapmap] |
| rs7154545 | 0.82[CEU][hapmap] |
| rs7156473 | 0.81[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs766023 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap] |
| rs8011958 | 0.85[CHB][hapmap] |
| rs8015611 | 0.85[CHB][hapmap] |
| rs8016735 | 0.85[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
