Variant report
| Variant | rs12880107 |
|---|---|
| Chromosome Location | chr14:79600370-79600371 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:54)
| rs_ID | r2[population] |
|---|---|
| rs11159395 | 0.86[JPT][hapmap] |
| rs11159396 | 0.85[CEU][hapmap] |
| rs12147468 | 0.86[JPT][hapmap] |
| rs12431671 | 0.86[JPT][hapmap] |
| rs12432076 | 0.84[CEU][hapmap] |
| rs12434809 | 0.86[JPT][hapmap] |
| rs12435865 | 0.86[JPT][hapmap] |
| rs12879491 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12880289 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12881434 | 0.86[JPT][hapmap] |
| rs12884914 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs12887850 | 0.85[JPT][hapmap] |
| rs12890392 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12894123 | 0.85[JPT][hapmap] |
| rs12895916 | 0.86[JPT][hapmap] |
| rs1547533 | 0.85[JPT][hapmap] |
| rs1566675 | 0.85[JPT][hapmap] |
| rs1875595 | 0.85[JPT][hapmap] |
| rs2035284 | 0.86[JPT][hapmap] |
| rs2062746 | 0.86[JPT][hapmap] |
| rs2127448 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2127450 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2134366 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2202168 | 0.85[JPT][hapmap] |
| rs2202175 | 0.85[JPT][hapmap] |
| rs2219848 | 0.85[CEU][hapmap] |
| rs2221297 | 0.86[JPT][hapmap] |
| rs2370901 | 0.86[JPT][hapmap] |
| rs2620398 | 0.86[JPT][hapmap] |
| rs4899732 | 0.86[JPT][hapmap] |
| rs4903816 | 0.86[JPT][hapmap] |
| rs4903819 | 0.86[JPT][hapmap] |
| rs4903820 | 0.85[JPT][hapmap] |
| rs4903830 | 0.86[JPT][hapmap] |
| rs6574478 | 0.86[JPT][hapmap] |
| rs6574480 | 0.86[JPT][hapmap] |
| rs6574492 | 0.85[JPT][hapmap] |
| rs6574495 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7149325 | 0.86[JPT][hapmap] |
| rs7151651 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs7154545 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7155818 | 0.86[JPT][hapmap] |
| rs7156473 | 0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72687493 | 0.83[EUR][1000 genomes] |
| rs766023 | 0.82[CEU][hapmap] |
| rs8004582 | 0.86[JPT][hapmap] |
| rs8006615 | 0.86[JPT][hapmap] |
| rs8006983 | 0.85[JPT][hapmap] |
| rs8007813 | 0.85[JPT][hapmap] |
| rs8008393 | 0.84[JPT][hapmap] |
| rs8010365 | 0.86[JPT][hapmap] |
| rs8010673 | 0.85[JPT][hapmap] |
| rs8020811 | 0.85[JPT][hapmap] |
| rs997842 | 0.92[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv948724 | chr14:79484233-79614043 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2761846 | chr14:79522198-79629157 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
