Variant report

Variant	rs61992500
Chromosome Location	chr14:79562095-79562096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12147740	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12431671	0.83[EUR][1000 genomes]
rs12893596	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894123	0.82[EUR][1000 genomes]
rs2035284	0.80[EUR][1000 genomes]
rs2202172	0.81[EUR][1000 genomes]
rs2202175	0.82[EUR][1000 genomes]
rs2202179	0.81[EUR][1000 genomes]
rs2202180	0.81[EUR][1000 genomes]
rs2202183	0.82[EUR][1000 genomes]
rs2202184	0.81[EUR][1000 genomes]
rs2221298	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2370900	0.81[EUR][1000 genomes]
rs2620398	0.80[EUR][1000 genomes]
rs4903830	0.82[EUR][1000 genomes]
rs7149325	0.81[EUR][1000 genomes]
rs7161610	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8004582	0.82[EUR][1000 genomes]
rs8019071	0.82[EUR][1000 genomes]
rs8020811	0.81[EUR][1000 genomes]
rs997842	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79561600-79564400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:79561800-79562400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79562000-79564000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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