Variant report

Variant	rs6574488
Chromosome Location	chr14:79549685-79549686
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10134650	0.83[EUR][1000 genomes]
rs10138639	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10139445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622043	1.00[ASN][1000 genomes]
rs11845522	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12893811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532727	0.83[EUR][1000 genomes]
rs1875596	0.92[ASN][1000 genomes]
rs1875597	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993959	0.95[AFR][1000 genomes]
rs2035285	0.87[AFR][1000 genomes]
rs2062743	0.83[EUR][1000 genomes]
rs2062745	0.83[EUR][1000 genomes]
rs2088965	0.83[EUR][1000 genomes]
rs2102170	0.83[EUR][1000 genomes]
rs2202170	0.83[EUR][1000 genomes]
rs2202173	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202174	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202176	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202177	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202178	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221299	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221300	1.00[ASN][1000 genomes]
rs2370896	0.83[EUR][1000 genomes]
rs2620388	0.92[AFR][1000 genomes]
rs2620389	0.95[AFR][1000 genomes]
rs2620395	0.88[AFR][1000 genomes]
rs2620397	0.95[AFR][1000 genomes]
rs2653534	0.95[AFR][1000 genomes]
rs2653535	0.95[AFR][1000 genomes]
rs2653536	0.95[AFR][1000 genomes]
rs2653537	0.95[AFR][1000 genomes]
rs2653538	0.95[AFR][1000 genomes]
rs2653539	1.00[ASN][1000 genomes]
rs2653540	0.92[AFR][1000 genomes]
rs2653541	0.95[AFR][1000 genomes]
rs2653542	0.95[AFR][1000 genomes]
rs4141948	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243661	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243662	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635270	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899729	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903815	0.83[EUR][1000 genomes]
rs4903826	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903827	1.00[ASN][1000 genomes]
rs4903831	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5023075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574479	0.83[EUR][1000 genomes]
rs6574481	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6574484	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6574485	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574487	0.81[ASN][1000 genomes]
rs6574489	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574490	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143117	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144999	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145587	1.00[ASN][1000 genomes]
rs7156110	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8005119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011782	0.83[EUR][1000 genomes]
rs8021865	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv565247	chr14:79508316-79555651	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79547200-79555800	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79547800-79556800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links