Variant report
Variant | rs28538310 |
---|---|
Chromosome Location | chr14:79029455-79029456 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:79022120..79024903-chr14:79027918..79029627,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10132085 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10132376 | 0.93[EUR][1000 genomes] |
rs10138731 | 1.00[EUR][1000 genomes] |
rs10141923 | 1.00[EUR][1000 genomes] |
rs10873318 | 0.85[EUR][1000 genomes] |
rs12100534 | 0.87[EUR][1000 genomes] |
rs12100535 | 1.00[EUR][1000 genomes] |
rs12323467 | 0.85[EUR][1000 genomes] |
rs12431997 | 0.85[EUR][1000 genomes] |
rs12434020 | 1.00[EUR][1000 genomes] |
rs12435491 | 0.93[EUR][1000 genomes] |
rs12435510 | 0.93[EUR][1000 genomes] |
rs12436134 | 0.93[EUR][1000 genomes] |
rs12437077 | 0.85[EUR][1000 genomes] |
rs12586229 | 0.92[ASN][1000 genomes] |
rs12588327 | 0.90[ASN][1000 genomes] |
rs17107885 | 0.83[ASN][1000 genomes] |
rs17107887 | 0.80[ASN][1000 genomes] |
rs2370825 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28599647 | 1.00[EUR][1000 genomes] |
rs35834627 | 0.93[EUR][1000 genomes] |
rs56813549 | 0.83[ASN][1000 genomes] |
rs58525848 | 0.83[ASN][1000 genomes] |
rs59354957 | 0.88[ASN][1000 genomes] |
rs60650553 | 1.00[EUR][1000 genomes] |
rs7160080 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8018626 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:79023400-79032200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |