Variant report
| Variant | rs35834627 |
|---|---|
| Chromosome Location | chr14:79040667-79040668 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10132085 | 0.93[EUR][1000 genomes] |
| rs10132376 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10138731 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10141923 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10873318 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12100534 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12100535 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12323467 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12431997 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12434020 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12435491 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12435510 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12436134 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12437077 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2370825 | 0.93[EUR][1000 genomes] |
| rs28538310 | 0.93[EUR][1000 genomes] |
| rs28599647 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60650553 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7160080 | 0.81[EUR][1000 genomes] |
| rs8018626 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79040600-79042200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
