Variant report

Variant	rs7160080
Chromosome Location	chr14:79029139-79029140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78987037..78987855-chr14:79028593..79029433,2	MCF-7	breast:
2	chr14:79022120..79024903-chr14:79027918..79029627,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132085	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132376	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10138082	0.82[CEU][hapmap]
rs10138731	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10141923	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10145600	0.82[CEU][hapmap]
rs10147304	0.82[CEU][hapmap]
rs10873318	1.00[CEU][hapmap]
rs11845483	0.82[CEU][hapmap]
rs12100535	0.87[EUR][1000 genomes]
rs12323467	1.00[CEU][hapmap]
rs12431997	1.00[CEU][hapmap]
rs12432145	1.00[CEU][hapmap]
rs12432323	1.00[CEU][hapmap]
rs12434020	0.87[EUR][1000 genomes]
rs12435491	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12435510	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12436134	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12437077	1.00[CEU][hapmap]
rs12586229	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs12588327	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12590068	1.00[CEU][hapmap]
rs17107885	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs17107887	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs17107968	0.82[CEU][hapmap]
rs2370825	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538310	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599647	0.87[EUR][1000 genomes]
rs35834627	0.81[EUR][1000 genomes]
rs4643247	1.00[CEU][hapmap]
rs56813549	0.83[ASN][1000 genomes]
rs58525848	0.83[ASN][1000 genomes]
rs59354957	0.88[ASN][1000 genomes]
rs60650553	0.87[EUR][1000 genomes]
rs7150885	1.00[JPT][hapmap]
rs8018626	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8021089	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79023400-79032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links