Variant report

Variant	rs214029
Chromosome Location	chr14:78816773-78816774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10132310	1.00[CHB][hapmap]
rs10140699	0.87[CEU][hapmap]
rs17107366	1.00[JPT][hapmap]
rs17107393	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17107411	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17107429	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17107436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107482	0.88[CEU][hapmap]
rs177270	1.00[YRI][hapmap]
rs214028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214032	1.00[YRI][hapmap]
rs2192416	0.87[CEU][hapmap]
rs2192420	0.88[CEU][hapmap]
rs2215834	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2215835	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2215836	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2366154	1.00[ASN][1000 genomes]
rs3891717	1.00[ASN][1000 genomes]
rs4384537	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs4520775	1.00[ASN][1000 genomes]
rs6574435	1.00[YRI][hapmap]
rs6574436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6574437	1.00[YRI][hapmap]
rs7146066	1.00[ASN][1000 genomes]
rs7148862	1.00[ASN][1000 genomes]
rs7149532	1.00[ASN][1000 genomes]
rs7149679	1.00[ASN][1000 genomes]
rs7152492	0.87[CEU][hapmap]
rs7157002	1.00[YRI][hapmap]
rs719055	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs719056	1.00[YRI][hapmap]
rs73316006	0.82[EUR][1000 genomes]
rs73327202	0.91[EUR][1000 genomes]
rs7492592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs759230	1.00[ASN][1000 genomes]
rs759231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8009240	0.84[EUR][1000 genomes]
rs8011578	1.00[YRI][hapmap]
rs887891	1.00[YRI][hapmap]
rs887892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs887893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs887894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs887895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs929607	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78813800-78820200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78814600-78825600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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