Variant report

Variant	rs929607
Chromosome Location	chr14:78839963-78839964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1003612	1.00[AMR][1000 genomes]
rs10132310	1.00[CHB][hapmap]
rs11849041	1.00[AMR][1000 genomes]
rs17107366	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17107393	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17107411	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17107436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17107589	1.00[CEU][hapmap]
rs177270	1.00[AMR][1000 genomes]
rs2052201	1.00[CEU][hapmap]
rs214025	1.00[AMR][1000 genomes]
rs214028	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs214029	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs214030	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs214031	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs214032	1.00[AMR][1000 genomes]
rs2215834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2366154	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3891717	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4384537	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4503719	1.00[AMR][1000 genomes]
rs4520775	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4903753	1.00[CEU][hapmap]
rs4903759	1.00[CEU][hapmap]
rs6574435	1.00[AMR][1000 genomes]
rs6574436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6574437	1.00[AMR][1000 genomes]
rs7146066	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7148862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7152051	1.00[AMR][1000 genomes]
rs7157002	1.00[AMR][1000 genomes]
rs7159969	1.00[AMR][1000 genomes]
rs7161493	1.00[AMR][1000 genomes]
rs719055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs719056	1.00[AMR][1000 genomes]
rs7492592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs759230	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs759231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8004415	1.00[AMR][1000 genomes]
rs8010358	1.00[AMR][1000 genomes]
rs8011578	1.00[AMR][1000 genomes]
rs887891	1.00[AMR][1000 genomes]
rs887892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs976330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78839600-78840000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:78839800-78840000	Enhancers	Brain Germinal Matrix	brain

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