Variant report

Variant	rs8011578
Chromosome Location	chr14:78835957-78835958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1003612	1.00[AMR][1000 genomes]
rs11849041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs177270	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs214025	1.00[AMR][1000 genomes]
rs214028	1.00[YRI][hapmap]
rs214029	1.00[YRI][hapmap]
rs214030	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs214032	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2366154	1.00[AMR][1000 genomes]
rs3891717	1.00[AMR][1000 genomes]
rs4384537	1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4503719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4520775	1.00[AMR][1000 genomes]
rs6574435	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574436	1.00[AMR][1000 genomes]
rs6574437	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7146066	1.00[AMR][1000 genomes]
rs7148862	1.00[AMR][1000 genomes]
rs7149532	1.00[AMR][1000 genomes]
rs7149679	1.00[AMR][1000 genomes]
rs7152051	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7157002	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159969	1.00[AMR][1000 genomes]
rs7161493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs719055	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs719056	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs759230	1.00[AMR][1000 genomes]
rs8004415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010358	1.00[AMR][1000 genomes]
rs8014642	1.00[MEX][hapmap]
rs887891	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887892	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs887893	1.00[AMR][1000 genomes]
rs887894	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs887895	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs929607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78835200-78839600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:78835600-78836400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links