Variant report

Variant	rs8004415
Chromosome Location	chr14:78829037-78829038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1003612	1.00[AMR][1000 genomes]
rs11849041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs177270	1.00[AMR][1000 genomes]
rs214025	1.00[AMR][1000 genomes]
rs214032	1.00[AMR][1000 genomes]
rs2366154	1.00[AMR][1000 genomes]
rs3891717	1.00[AMR][1000 genomes]
rs4384537	1.00[AMR][1000 genomes]
rs4503719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4520775	1.00[AMR][1000 genomes]
rs6574435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574436	1.00[AMR][1000 genomes]
rs6574437	1.00[AMR][1000 genomes]
rs7146066	1.00[AMR][1000 genomes]
rs7148862	1.00[AMR][1000 genomes]
rs7149532	1.00[AMR][1000 genomes]
rs7149679	1.00[AMR][1000 genomes]
rs7152051	1.00[AMR][1000 genomes]
rs7157002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159969	1.00[AMR][1000 genomes]
rs7161493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs719055	1.00[AMR][1000 genomes]
rs719056	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs759230	1.00[AMR][1000 genomes]
rs8010358	1.00[AMR][1000 genomes]
rs8011578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887892	1.00[AMR][1000 genomes]
rs887893	1.00[AMR][1000 genomes]
rs887894	1.00[AMR][1000 genomes]
rs887895	1.00[AMR][1000 genomes]
rs929607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2440961	chr14:78827652-78829318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78826400-78833200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78827000-78833400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78827400-78833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:78827800-78831800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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