Variant report
| Variant | rs8010358 |
|---|---|
| Chromosome Location | chr14:78865281-78865282 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000239163 | TF binding region |
| NRXN3 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1003612 | 1.00[AMR][1000 genomes] |
| rs11849041 | 1.00[AMR][1000 genomes] |
| rs177270 | 1.00[AMR][1000 genomes] |
| rs214025 | 1.00[AMR][1000 genomes] |
| rs214032 | 1.00[AMR][1000 genomes] |
| rs2366154 | 1.00[AMR][1000 genomes] |
| rs3891717 | 1.00[AMR][1000 genomes] |
| rs4384537 | 1.00[AMR][1000 genomes] |
| rs4503719 | 1.00[AMR][1000 genomes] |
| rs4520775 | 1.00[AMR][1000 genomes] |
| rs6574435 | 1.00[AMR][1000 genomes] |
| rs6574436 | 1.00[AMR][1000 genomes] |
| rs6574437 | 1.00[AMR][1000 genomes] |
| rs7146066 | 1.00[AMR][1000 genomes] |
| rs7148862 | 1.00[AMR][1000 genomes] |
| rs7149532 | 1.00[AMR][1000 genomes] |
| rs7149679 | 1.00[AMR][1000 genomes] |
| rs7152051 | 1.00[AMR][1000 genomes] |
| rs7157002 | 1.00[AMR][1000 genomes] |
| rs7159969 | 1.00[AMR][1000 genomes] |
| rs7161493 | 1.00[AMR][1000 genomes] |
| rs719055 | 1.00[AMR][1000 genomes] |
| rs719056 | 1.00[AMR][1000 genomes] |
| rs759230 | 1.00[AMR][1000 genomes] |
| rs8004415 | 1.00[AMR][1000 genomes] |
| rs8011578 | 1.00[AMR][1000 genomes] |
| rs887891 | 1.00[AMR][1000 genomes] |
| rs887892 | 1.00[AMR][1000 genomes] |
| rs887893 | 1.00[AMR][1000 genomes] |
| rs887894 | 1.00[AMR][1000 genomes] |
| rs887895 | 1.00[AMR][1000 genomes] |
| rs929607 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78864600-78866200 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr14:78865000-78865400 | Enhancers | Brain Anterior Caudate | brain |
| 3 | chr14:78865200-78869400 | Weak transcription | Brain Angular Gyrus | brain |
