Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1003612	1.00[AMR][1000 genomes]
rs11849041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs177270	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs214025	1.00[AMR][1000 genomes]
rs214028	1.00[YRI][hapmap]
rs214029	1.00[YRI][hapmap]
rs214030	1.00[YRI][hapmap]
rs214032	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2366154	1.00[AMR][1000 genomes]
rs3891717	1.00[AMR][1000 genomes]
rs4384537	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4503719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4520775	1.00[AMR][1000 genomes]
rs6574435	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574436	1.00[AMR][1000 genomes]
rs6574437	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7146066	1.00[AMR][1000 genomes]
rs7148862	1.00[AMR][1000 genomes]
rs7149532	1.00[AMR][1000 genomes]
rs7149679	1.00[AMR][1000 genomes]
rs7152051	1.00[AMR][1000 genomes]
rs7159969	1.00[AMR][1000 genomes]
rs7161493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs719055	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs719056	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs759230	1.00[AMR][1000 genomes]
rs8004415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010358	1.00[AMR][1000 genomes]
rs8011578	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887891	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs887892	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs887893	1.00[AMR][1000 genomes]
rs887894	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs887895	1.00[AMR][1000 genomes]
rs929607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78833200-78835600	Enhancers	Brain Germinal Matrix	brain
2	chr14:78833400-78834600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78833600-78834000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:78833600-78834600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:78833600-78834800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:78833600-78835400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:78833800-78834000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:78833800-78834000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr14:78833800-78834200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:78833800-78834600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:78833800-78834600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:78833800-78834600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr14:78833800-78834800	Enhancers	Cortex derived primary cultured neurospheres	brain

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