Variant report

Variant	rs17107411
Chromosome Location	chr14:78814059-78814060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17107366	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17107393	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107436	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17107437	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17107446	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17107589	1.00[CEU][hapmap]
rs2052201	1.00[CEU][hapmap]
rs214028	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs214029	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs214030	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs214031	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2215834	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2366154	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3891717	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4384537	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4520775	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903753	1.00[CEU][hapmap]
rs4903759	1.00[CEU][hapmap]
rs6574436	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7146066	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7148862	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7149532	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7149679	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs719055	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73316421	1.00[EUR][1000 genomes]
rs73327172	1.00[EUR][1000 genomes]
rs7492592	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs759230	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs759231	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs887892	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs887893	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs887894	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs887895	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs929607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs976330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78810400-78814400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:78810800-78814400	Enhancers	Fetal Intestine Small	intestine
3	chr14:78813200-78814200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:78813800-78814600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:78813800-78815000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:78813800-78820200	Weak transcription	Brain Germinal Matrix	brain

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