Variant report

Variant	rs17107393
Chromosome Location	chr14:78811601-78811602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17107366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107411	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107436	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17107437	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107446	1.00[JPT][hapmap]
rs17107589	1.00[CEU][hapmap]
rs2052201	1.00[CEU][hapmap]
rs214028	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs214029	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs214030	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs214031	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2215834	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2366154	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3891717	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4384537	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4520775	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4903753	1.00[CEU][hapmap]
rs4903759	1.00[CEU][hapmap]
rs6574436	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7146066	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7148862	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7149532	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7149679	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs719055	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73316421	1.00[EUR][1000 genomes]
rs73327172	1.00[EUR][1000 genomes]
rs7492592	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs759230	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs759231	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs887892	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs887893	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs887894	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs887895	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs929607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs976330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78810200-78812000	Enhancers	Fetal Brain Female	brain
2	chr14:78810200-78813800	Enhancers	Brain Germinal Matrix	brain
3	chr14:78810400-78814400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:78810800-78813000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:78810800-78814400	Enhancers	Fetal Intestine Small	intestine

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