Variant report

Variant	rs73327172
Chromosome Location	chr14:78875343-78875344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12892370	1.00[ASN][1000 genomes]
rs17107366	1.00[EUR][1000 genomes]
rs17107393	1.00[EUR][1000 genomes]
rs17107411	1.00[EUR][1000 genomes]
rs17107437	1.00[EUR][1000 genomes]
rs17107589	0.85[AMR][1000 genomes]
rs2215834	1.00[EUR][1000 genomes]
rs2366154	1.00[EUR][1000 genomes]
rs34598586	1.00[ASN][1000 genomes]
rs3891717	1.00[EUR][1000 genomes]
rs4384537	1.00[EUR][1000 genomes]
rs4520775	1.00[EUR][1000 genomes]
rs61016995	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6574436	1.00[EUR][1000 genomes]
rs7146066	1.00[EUR][1000 genomes]
rs7148862	1.00[EUR][1000 genomes]
rs7149532	1.00[EUR][1000 genomes]
rs7149679	1.00[EUR][1000 genomes]
rs719055	1.00[EUR][1000 genomes]
rs73311803	0.85[AMR][1000 genomes]
rs73311806	0.85[AMR][1000 genomes]
rs73316405	0.85[AMR][1000 genomes]
rs73316421	1.00[EUR][1000 genomes]
rs73329122	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7492592	1.00[EUR][1000 genomes]
rs759230	1.00[EUR][1000 genomes]
rs887892	1.00[EUR][1000 genomes]
rs887893	1.00[EUR][1000 genomes]
rs887894	1.00[EUR][1000 genomes]
rs887895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78874200-78876600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:78875200-78878000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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