Variant report

Variant	rs17107589
Chromosome Location	chr14:78905017-78905018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11159358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11159359	0.83[ASN][1000 genomes]
rs12892370	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17107366	1.00[CEU][hapmap]
rs17107393	1.00[CEU][hapmap]
rs17107411	1.00[CEU][hapmap]
rs17107437	1.00[CEU][hapmap]
rs17107503	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17107557	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17107585	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2024332	0.85[CHB][hapmap]
rs2052201	1.00[CEU][hapmap]
rs2110419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2215834	1.00[CEU][hapmap]
rs35061087	0.83[ASN][1000 genomes]
rs4903753	1.00[CEU][hapmap]
rs4903758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4903759	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58059538	0.98[ASN][1000 genomes]
rs59408728	0.96[ASN][1000 genomes]
rs61016995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574436	1.00[CEU][hapmap]
rs66537136	1.00[ASN][1000 genomes]
rs66994883	1.00[ASN][1000 genomes]
rs719055	1.00[CEU][hapmap]
rs72681549	0.98[ASN][1000 genomes]
rs73311803	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314796	0.97[ASN][1000 genomes]
rs73316405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73327172	0.85[AMR][1000 genomes]
rs73329122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7492592	1.00[CEU][hapmap]
rs759231	1.00[CEU][hapmap]
rs887892	1.00[CEU][hapmap]
rs887893	1.00[CEU][hapmap]
rs887894	1.00[CEU][hapmap]
rs887895	1.00[CEU][hapmap]
rs929607	1.00[CEU][hapmap]
rs976330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
2	chr14:78904800-78905600	Enhancers	Brain Germinal Matrix	brain

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