Variant report

Variant	rs59408728
Chromosome Location	chr14:78899154-78899155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10136661	0.86[EUR][1000 genomes]
rs10483901	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11159358	0.89[AMR][1000 genomes]
rs11159359	0.89[AMR][1000 genomes]
rs11159361	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12892370	0.87[AMR][1000 genomes]
rs17107538	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107542	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17107548	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17107550	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17107557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107573	0.81[AFR][1000 genomes]
rs17107581	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107585	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107589	0.96[ASN][1000 genomes]
rs17107591	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107601	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17107609	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107613	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2024332	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2110419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2110423	0.86[EUR][1000 genomes]
rs2192412	0.86[EUR][1000 genomes]
rs35061087	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4903758	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4903759	0.96[ASN][1000 genomes]
rs55905917	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55960597	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55979048	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56063448	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58059538	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59095684	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6574445	0.85[EUR][1000 genomes]
rs6574446	0.85[EUR][1000 genomes]
rs66485366	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66537136	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66607952	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66647618	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66994883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67217620	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67254727	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67267603	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67546397	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67985811	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68180395	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72681546	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72681549	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72681562	0.86[EUR][1000 genomes]
rs73311806	0.96[ASN][1000 genomes]
rs73314796	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73316405	0.96[ASN][1000 genomes]
rs8009964	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8012198	0.85[EUR][1000 genomes]
rs8013213	0.85[EUR][1000 genomes]
rs8014352	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8014780	0.86[EUR][1000 genomes]
rs8015539	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8015993	0.86[EUR][1000 genomes]
rs8017625	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8018020	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8020296	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8020600	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8020758	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8021104	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78892200-78904800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
3	chr14:78899000-78899800	Weak transcription	Fetal Brain Male	brain

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