Variant report
| Variant | rs11851331 |
|---|---|
| Chromosome Location | chr14:78930086-78930087 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10135795 | 0.82[CHB][hapmap] |
| rs10136682 | 1.00[CEU][hapmap] |
| rs10483902 | 0.96[CEU][hapmap] |
| rs10873317 | 0.96[CEU][hapmap] |
| rs1122841 | 0.81[AMR][1000 genomes] |
| rs1122898 | 0.81[AMR][1000 genomes] |
| rs11851070 | 0.82[YRI][hapmap] |
| rs11851333 | 0.92[CEU][hapmap] |
| rs12897526 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2110421 | 0.82[AFR][1000 genomes] |
| rs2193665 | 0.96[CEU][hapmap] |
| rs368692 | 0.96[CEU][hapmap] |
| rs4254256 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4903776 | 0.81[AMR][1000 genomes] |
| rs6574440 | 0.82[CHB][hapmap] |
| rs7143565 | 0.82[CHB][hapmap] |
| rs8006004 | 0.81[CEU][hapmap] |
| rs8008554 | 0.88[CHB][hapmap] |
| rs8008709 | 0.88[CHB][hapmap] |
| rs8015566 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
