Variant report

Variant	rs368692
Chromosome Location	chr14:78968484-78968485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10136682	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10483902	0.94[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs10483903	0.83[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap]
rs10483905	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs10782463	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs10873317	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11159364	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs1122841	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122842	0.83[CHB][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1122898	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622040	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11626833	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11851331	0.96[CEU][hapmap]
rs11851333	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap]
rs12586255	0.82[CHB][hapmap]
rs12586887	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12588305	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12897526	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs1468743	0.84[TSI][hapmap]
rs1544622	0.84[TSI][hapmap]
rs1861082	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2192418	0.95[JPT][hapmap]
rs2193665	1.00[CEU][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap]
rs2366101	0.84[TSI][hapmap]
rs35810359	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254256	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903773	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs4903776	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574451	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7150018	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs727208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8015566	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1037999	chr14:78966643-79026875	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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