Variant report

Variant	rs12897526
Chromosome Location	chr14:78943255-78943256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10131390	0.81[CHB][hapmap]
rs10135795	0.81[CHB][hapmap]
rs10136254	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10136682	0.84[CEU][hapmap]
rs10483902	0.80[CEU][hapmap];0.91[GIH][hapmap]
rs10782463	0.82[GIH][hapmap]
rs11159364	0.85[GIH][hapmap]
rs11851331	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11851333	0.91[GIH][hapmap];0.91[MEX][hapmap]
rs1861082	0.85[GIH][hapmap]
rs2193665	0.81[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap]
rs368692	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap]
rs4254256	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6574440	0.81[CHB][hapmap]
rs6574451	0.82[GIH][hapmap]
rs7143565	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs8008554	0.87[CHB][hapmap]
rs8008709	0.87[CHB][hapmap]
rs8015566	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78942800-78950600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:78943200-78943800	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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