Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131390	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10136254	0.88[CHB][hapmap]
rs10139602	0.94[CHB][hapmap]
rs10483899	0.82[CEU][hapmap]
rs1112573	0.82[CEU][hapmap]
rs11159357	0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11851331	0.82[CHB][hapmap]
rs12432856	0.82[CEU][hapmap]
rs12897526	0.81[CHB][hapmap]
rs17755949	0.82[CEU][hapmap]
rs2215837	0.84[TSI][hapmap]
rs34853774	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6574440	0.88[CHB][hapmap];0.82[TSI][hapmap]
rs6574441	0.94[CHB][hapmap];0.82[TSI][hapmap]
rs7143565	0.88[CHB][hapmap]
rs7144816	0.83[MEX][hapmap]
rs7157332	0.94[CHB][hapmap];0.82[TSI][hapmap]
rs8008554	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8008709	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8017044	0.84[TSI][hapmap]
rs965408	0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10135795	ACYP1	cis	cerebellum	SCAN
rs10135795	VSX2	cis	cerebellum	SCAN
rs10135795	HEATR4	cis	parietal	SCAN
rs10135795	LIN52	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78878000-78879200	Enhancers	GM12878-XiMat	blood
6	chr14:78878000-78880000	Weak transcription	Brain Germinal Matrix	brain

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