Variant report

Variant	rs6574440
Chromosome Location	chr14:78876626-78876627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78868093..78870050-chr14:78874447..78876831,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10131390	0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10135795	0.88[CHB][hapmap];0.82[TSI][hapmap]
rs10136254	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139602	0.94[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11159357	0.88[TSI][hapmap];0.81[AMR][1000 genomes]
rs11851331	0.82[CHB][hapmap]
rs12887343	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12893958	1.00[CEU][hapmap]
rs12897526	0.81[CHB][hapmap]
rs2110426	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2110427	1.00[CEU][hapmap]
rs2215837	1.00[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs6574434	0.82[CEU][hapmap]
rs6574441	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7143565	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7149345	0.88[CEU][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7156727	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157332	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8006004	0.84[CEU][hapmap]
rs8006308	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8007953	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8008554	0.94[CHB][hapmap];0.82[TSI][hapmap]
rs8008709	0.94[CHB][hapmap];0.82[TSI][hapmap]
rs8017044	1.00[CEU][hapmap];0.81[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs917906	0.86[GIH][hapmap]
rs965408	1.00[CEU][hapmap];0.81[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6574440	HEATR4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78875200-78878000	Weak transcription	GM12878-XiMat	blood
6	chr14:78876600-78876800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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