Variant report

Variant	rs6574434
Chromosome Location	chr14:78815139-78815140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10130577	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs12893958	0.81[CEU][hapmap]
rs1882819	0.92[CEU][hapmap];0.84[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs2110426	0.82[CEU][hapmap]
rs2110427	0.82[CEU][hapmap]
rs2215837	0.82[CEU][hapmap]
rs6574440	0.82[CEU][hapmap]
rs6574441	0.82[CEU][hapmap]
rs7157332	0.82[CEU][hapmap]
rs8017044	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs965408	0.82[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6574434	ENTPD5	cis	parietal	SCAN
rs6574434	ACOT4	cis	parietal	SCAN
rs6574434	TSHR	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78813800-78820200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78814600-78825600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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