Variant report

Variant	rs917906
Chromosome Location	chr14:78869474-78869475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10131390	0.95[CEU][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11159355	0.86[AMR][1000 genomes]
rs11159356	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11159357	0.96[CEU][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12883984	1.00[CEU][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34853774	0.90[TSI][hapmap]
rs60110504	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6574440	0.86[GIH][hapmap]
rs7157332	0.81[GIH][hapmap]
rs8020842	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs969071	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs917906	GTF2A1	cis	parietal	SCAN
rs917906	COQ6	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78868200-78870200	Enhancers	HSMM	muscle
3	chr14:78868400-78870200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:78868400-78870400	Enhancers	NH-A	brain
5	chr14:78869200-78870200	Enhancers	Brain Germinal Matrix	brain
6	chr14:78869200-78872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:78869400-78869600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:78869400-78869600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78869400-78869800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:78869400-78870800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:78869400-78871000	Active TSS	Brain Angular Gyrus	brain
12	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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