Variant report
| Variant | rs11159356 |
|---|---|
| Chromosome Location | chr14:78865965-78865966 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:38)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:38 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| NRXN3 | TF binding region |
| ENSG00000239163 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10131390 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11159355 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11159357 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12883984 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17755949 | 0.83[ASN][1000 genomes] |
| rs34853774 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60110504 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72681525 | 0.83[ASN][1000 genomes] |
| rs8012215 | 0.80[AMR][1000 genomes] |
| rs8020842 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs917906 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78864600-78866200 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr14:78865200-78869400 | Weak transcription | Brain Angular Gyrus | brain |
| 3 | chr14:78865400-78871200 | Weak transcription | Brain Anterior Caudate | brain |
